Evolution from microbial RNA polymerase: effects to have highest-scale bacterial phylogeny, domain name accretion, and you may lateral gene import

Jones, D. T., Taylor, W. R., and you may Thornton, J. Meters. (1992). The rapid age group from mutation study matrices regarding necessary protein sequences. Bioinformatics 8, 275–282. doi: /bioinformatics/8.3.275

Jukes, T. H., and you may Cantor, C. Roentgen. (1969). “Progression of necessary protein particles,” from inside the Mammalian Protein Metabolic process, Vol. step 3, ed. H. Letter. Munro (Nyc, NY: Informative Press), 21–132.

Kappes, R. M., Kempf, B., Kneip, S., Boch, J., Gade, J., Meier-Wagner, J., et al. (1999). A couple of evolutionarily closely relevant ABC transporters mediate the use off choline to possess synthesis of one’s osmoprotectant glycine betaine when you look at the Bacillus subtilis. Mol. Microbiol. thirty two, 203–216. doi: /j.1365-cuatro.x

Kassem, We. I., Khatri, Meters., Esseili, Yards. Good., Sanad, Y. M., Saif, Y. Yards., Olson, J. W., et al. (2012). Respiratory proteins contribute differentially in order to Campylobacter jejuni’s endurance along with vitro communication having hosts’ intestinal structure. BMC Microbiol. . doi: -2180-12-258

Katoh, K., Misawa, K., Kuma, K., and you may Miyata, T. (2002). MAFFT: a book method for quick numerous series alignment centered on timely Fourier transform. Nucleic Acids Res. 31, 3059–3066. doi: /nar/gkf436

Katoh, K., and you will Standley, D. Meters. (2013). MAFFT numerous sequence alignment application type seven: developments when you look at the show and you may features. Mol. Biol. Evol. 30, 772–780. doi: /molbev/mst010

Klenk, H

Kern, Yards., Klotz, Yards. Grams., and you will Simon, J. (2011a). The fresh Wolinella succinogenes mcc gene cluster encodes an unusual breathing sulphite avoidance system. Mol. Microbiol. 82, 1515–1530. doi: /j.1365-6.x

Kern, M., Volz, J., and you will Simon, J. (2011b). The fresh oxidative and you will nitrosative stress protection network out of Wolinella succinogenes: Cytochrome c nitrite reductase mediates the pressure response to nitrite, nitric oxide, hydroxylamine and hydrogen peroxide. Environ. Microbiol. thirteen, 2478–2494. doi: /j.1462-0.x

Kern, Meters., and you will Simon, J. (2009). Electron transport chains and bioenergetics off breathing nitrogen kcalorie burning within the Wolinella succinogenes or other Epsilonproteobacteria. Biochim. Biophys. Acta 1787, 646–656. doi: /j.bbabio.

Kersters, K., De Vos, P., Gillis, M., Swings, J., Vandamme, P., and you may Stakebrandt, Age. (2006). Inclusion into the Proteobacteria. Nyc, NY: Springer. doi: /0-387-30745-step one-step one

Kimura, Meters. (1980). A simple method koreancupid tanД±Еџma uygulamalarД± for estimating evolutionary rates out of ft substitutions owing to comparative education off nucleotide sequences. J. Mol. Evol. 16, 111–120. doi: /BF01731581

P., Meier, T. D., Durovic, P., Schwass, V., Lottspeich, F., Dennis, P. P., mais aussi al. (1999). RNA polymerase of Aquifex pyrophilus: implications towards evolution of the bacterial rpoBC operon and extremely thermophilic germs. J. Mol. Evol. forty eight, 528–541. doi: /PL00006496

Klotz, M. G., and you will Stein, L. Y. (2008). Nitrifier genomics and progression of your nitrogen duration. FEMS Microbiol. Lett. 278, 146–156. doi: /j.1574-0.x

Konstantinidis, K. T., and Tiedje, J. M. (2005). On the a genome-mainly based taxonomy to own prokaryotes. J. Bacteriol. 187, 6258–6264. doi: /JB.-

Kozlowski, J. An excellent., Stieglmeier, Meters., Schleper, C., Klotz, Yards. Grams., and Stein, L. Y. (2016). Pathways and you can trick intermediates needed for obligate cardio ammonia-mainly based chemolithotrophy when you look at the micro-organisms and you will Thau.dos

R. Krieg, J

Kozubal, Yards. Good., Romine, Yards., Jennings, Roentgen. D., Jay, Z. J., Tringe, S. G., Rusch, D. B., mais aussi al. (2013). Geoarchaeota: yet another applicant phylum on Archaea away from high-temperature acidic iron mats during the Yellowstone National Playground. ISME J. eight, 622–634. doi: /ismej.

Kuever, J., Rainey, F. A beneficial., and you will Widdel, F. (2006a). “Loved ones We. Desulfurellaceae fam. nov,” inside the Bergey’s Tips guide of Medical Bacteriology, (The Proteobacteria), Part C (The new Leader-, Beta-, Delta-, and you may Epsilonproteobacteria), Vol. dos, next Edn. eds D. J. Brenner, Letter. T. Staley, and you may Grams. Meters. Garrity (Ny, NY: Springer), 923.

Kuever, J., Rainey, F. A beneficial., and you can Widdel, F. (2006b). “Acquisition We. Desulfurellales ord. nov,” within the Bergey’s Instructions away from Logical Bacteriology, (The new Proteobacteria), region C (The fresh Leader-, Beta-, Delta-, and you will Epsilonproteobacteria)2, Vol. 2, next Edn. eds D. J. Brenner, N. T. Staley, and you will G. M. Garrity (New york, NY: Springer), 922.